comp.lang.idl-pvwave archive - RDF feed
type: channel
description: Messages from Usenet group comp.lang.idl-pvwave, compiled by Paulo Penteado
items: REBIN Question
items: Re: REBIN Question
items: Re: rebin question

REBIN Question
type: item
description: REBIN question Either I have uncovered a bug in REBIN in the Mac version of IDL V 5.0.3 or I donï¿½t fully understand how REBIN works. I want to take a 2-D byte array at_target that is 64X64 in size and make it into a 1-D byte array with the same number of elements and vis versa. The results are not what I am expecting so I used the code below to test it. The displayed images are not even close to each other. Would someone be kind enough to explain why and how I can do this other than using the code below(test2) the offending section. Thanks. pro test window,5,xsize= 128, ysize = 128 window,6,xsize= 128, ysize = 128 at_target= bytarr(64,64) at_target(0:63,0:63) = 255B at_target(10:20,10:20) = 200B; wset,5 tvscl, at_target wset,6 tvscl, rebin(rebin(at_target, 64*64),64,64) stop end pro test2 window,5,xsize= 128, ysize = 128 window,6,xsize= 128, ysize = 128 at_target = bytarr(64,64) at_target2 = bytarr(64,64) at_target(0:63,0:63) = 255B at_target(10:20,10:20) = 200B; d1target = btarr(64*64) n=0 for x=0,63 do begin for y=0,63 do begin d1target[n] = at_target[x,y] at_target2 [x,y] = d1target[n] n = n + 1 endfor; for y=0,63 do begin endfor; for x=0,63 do begin wset,5 tvscl, at_target wset,6 tvscl, at_target2 stop end -- Patrick Ford pford@bcm.tmc.edu
creator: pford
date: 1998-03-14T08:00:00-00:00

Re: REBIN Question
type: item
description: Hi Patrick Patrick Ford, MD wrote: > > REBIN question > > Either I have uncovered a bug in REBIN in the Mac version of IDL V 5.0.3 > or I don¹t fully understand how REBIN works. I want to take a 2-D byte > array at_target that is 64X64 in size and make it into a 1-D byte array > with the same number of elements and vis versa. The results are not what > I am expecting so I used the code below to test it. The displayed images > are not even close to each other. > > Would someone be kind enough to explain why and how I can do this other > than using the code below(test2) the offending section. > > Thanks. > I finally understand what you want to do and what is happening. The trick is that rebin does change the contents of the array by bilineair interpolation when maximizing a dimension and neighbourhood averaging when minimizing. By doing rebin(at_target, 64*64) on a bytarr(64,64) you rescale this array, thus getting a bytarr(4096,1). BUT! Rebin uses neighborhood averaging whereby your code: > at_target= bytarr(64,64) > at_target(0:63,0:63) = 255B > at_target(10:20,10:20) = 200B; produces a bytarr(4096,1) with roughly at_target(640:1280,1) EQ 200B If you then again use rebin(at_target,64,64) this image will be stretched in the second dimension whereby making at_target(10:20,*) EQ 200B. So instead of a square you end up with a line! This is not what you want to do. You should use REFORM instead which will only change the way in which the array-elements are indexed and NOT alter the actual data. Doing this in both instances will give the desired result. pro test window,5,xsize= 128, ysize = 128 window,6,xsize= 128, ysize = 128 at_target= bytarr(64,64) at_target(0:63,0:63) = 255B at_target(10:20,10:20) = 200B; wset,5 tvscl, at_target wset,6 ; REBIN modifies the data ; tvscl, rebin(rebin(at_target, 64*64),64,64) ; REFORM does NOT modify the data tvscl, reform(reform(at_target, 64*64),64,64) end Hope this makes things a bit clear. Cheers, Armand -- **************************…
creator: Armand J. L. Jongen
date: 1998-03-17T08:00:00-00:00

Re: REBIN Question
type: item
description: Thanks to all who replied. I see that I need to use reform, but now I understand why rebin was giving the "odd" results. Patrick Ford, MD pford@bcm.tmc.edu Armand J.L.Jongen (a.j.jongen@amc.uva.nl) wrote: : Hi Patrick : Patrick Ford, MD wrote: : > = : > REBIN question : > = : > Either I have uncovered a bug in REBIN in the Mac version of IDL V 5.0.= : 3 : > or I don=B9t fully understand how REBIN works. I want to take a 2-D by= : te : > array at_target that is 64X64 in size and make it into a 1-D byte array= : > with the same number of elements and vis versa. The results are not wh= : at : > I am expecting so I used the code below to test it. The displayed image= : s : > are not even close to each other. : > = : > Would someone be kind enough to explain why and how I can do this other= : > than using the code below(test2) the offending section. : > = : > Thanks. : > = : I finally understand what you want to do and what is happening. The : trick is = : that rebin does change the contents of the array by bilineair : interpolation when : maximizing a dimension and neighbourhood averaging when minimizing. By : doing = : rebin(at_target, 64*64) on a bytarr(64,64) you rescale this array, = : thus getting a bytarr(4096,1). BUT! Rebin uses neighborhood averaging : whereby : your code: : > at_target=3D bytarr(64,64) : > at_target(0:63,0:63) =3D 255B : > at_target(10:20,10:20) =3D 200B; : produces a bytarr(4096,1) with roughly : at_target(640:1280,1) EQ 200B : If you then again use rebin(at_target,64,64) this image will be : stretched : in the second dimension whereby making at_target(10:20,*) EQ 200B. So : instead : of a square you end up with a line! : This is not what you want to do. You should use REFORM instead which : will only : change the way in which the array-elements are indexed and NOT alter the : actual : data. Doing this in both instances will give the desired result. : pro test : window,5,xsize=3D 128, ysize =3D 128 : window,6,xsize=3D 128, ysize =3D 128 : = : …
creator: pford
date: 1998-03-18T08:00:00-00:00

Re: rebin question
type: item
description: print, round(rebin(float([5,5,5,5,4]),1)) Hassle? Maybe you could write a function. Which leads me to a new question: Is it possible to define a function or procedure in IDL that can take an arbitrary number of arguments, e.g.: function my_rebin, a, arg1, arg2, ... return, round( rebin( float(a), arg1, arg2, ... ) ) end On Fri, 22 Mar 2002 11:58:41 -0500, Jonathan Joseph <jj21@cornell.edu> wrote: > I figured I would use rebin to downsample an image by averaging the > pixels in blocks of specified size. What I discovered, was that for > integer type images, rebin averages the pixels, but then instead of > rounding to the nearest integer, simply takes the integer part of > the average. Hence: > > print, rebin([5,5,5,5,4], 1) > > gives the result of 4, not 5 which is what I would like. I suppose > this is done for speed - to work around the problem, I need to convert > to a floating point type, do the rebin, then round, then convert back > to the proper integer type - a hassle. > > But, I would really like a more generic way of doing downsampling > of this sort, without the high overhead of a loop. Apart from > taking the mean of a block of pixels, I would also like the option > of downsampling using the median of a block of pixels, or using the > mean of a block of pixels disregarding the farthest outlier (or > n outliers). > > Has anyone written IDL code to do downsampling in a more generalized > way than rebin, or have any clever ideas about how to do it quickly? > > Thanks
creator: hradilv.nospam
date: 2002-03-22T17:11:17-00:00

Re: rebin question
type: item
description: hradilv.nospam@yahoo.com (Vince) writes: > print, round(rebin(float([5,5,5,5,4]),1)) > > Hassle? > > Maybe you could write a function. Which leads me to a new question: > > Is it possible to define a function or procedure in IDL that can take > an arbitrary number of arguments, e.g.: > > function my_rebin, a, arg1, arg2, ... > > return, round( rebin( float(a), arg1, arg2, ... ) ) > end Answer: no, but I've wanted one for a long time. Craig -- ------------------------------------------------------------ -------------- Craig B. Markwardt, Ph.D. EMAIL: craigmnet@cow.physics.wisc.edu Astrophysics, IDL, Finance, Derivatives | Remove "net" for better response ------------------------------------------------------------ --------------
creator: Craig Markwardt
date: 2002-03-22T18:31:18-00:00

Re: rebin question
type: item
description: It looks nice doesn't it, and I did write a procedure for the simple case of averaging, but it's not as clean cut as you indicate: 1. first one needs to get the type of the incoming image - you don't want to round the result of a floating point type image - that would give you the wrong result. 2. conversion should be done to double precision floating point (not float) otherwise large long integers will lose precision. loss of precision for large L64 integers will occur even with conversion to double, so they can't be handled properly at all. 3. need to convert back to the proper type, so your solution should be wrapped by a fix(..., type=type) 4. instead of a rebin, there is now a rebin, two type conversions and a round, which will slow things down and use more memory. So, it is a hassle. But yes, it's still not difficult to write a function to handle the SIMPLE case of averaging for CERTAIN data types. But that does not help with the problem of writing a more general function that handles downsampling using median or downsampling using a mean excluding outliers (pixels with values far from the mean) or downsampling using your favorite method. Doing this quickly in IDL means doing it w/o loops, so while conceptually the problem is not difficult, it does seem somewhat more difficult to do it properly in IDL. Anyone out there thought about this problem before? -Jonathan Vince wrote: > > print, round(rebin(float([5,5,5,5,4]),1)) > > Hassle? > > Maybe you could write a function. Which leads me to a new question: > > Is it possible to define a function or procedure in IDL that can take > an arbitrary number of arguments, e.g.: > > function my_rebin, a, arg1, arg2, ... > > return, round( rebin( float(a), arg1, arg2, ... ) ) > end > > On Fri, 22 Mar 2002 11:58:41 -0500, Jonathan Joseph <jj21@cornell.edu> > wrote: > >> I figured I would use rebin to downsample an image by averaging the >> pixels in blocks of specified size. What I discovered, was that for >> integer type i…
creator: Jonathan Joseph
date: 2002-03-22T18:40:32-00:00

Re: rebin question
type: item
description: Sorry. I see the hassle now. I just did a quick search for 'rebin' at http://www.astro.washington.edu/deutsch/idl/htmlhelp/index.h tml and maybe you should take a look at 'boxave'? On Fri, 22 Mar 2002 13:40:32 -0500, Jonathan Joseph <jj21@cornell.edu> wrote: > > It looks nice doesn't it, and I did write a procedure for the simple > case of averaging, but it's not as clean cut as you indicate: > > 1. first one needs to get the type of the incoming image - you don't > want to round the result of a floating point type image - that > would give you the wrong result. > > 2. conversion should be done to double precision floating point > (not float) otherwise large long integers will lose precision. > loss of precision for large L64 integers will occur even with > conversion to double, so they can't be handled properly at all. > > 3. need to convert back to the proper type, so your solution > should be wrapped by a fix(..., type=type) > > 4. instead of a rebin, there is now a rebin, two type conversions > and a round, which will slow things down and use more memory. > > So, it is a hassle. > > But yes, it's still not difficult to write a function to handle the > SIMPLE case of averaging for CERTAIN data types. But that does not > help with the problem of writing a more general function that handles > downsampling using median or downsampling using a mean excluding > outliers (pixels with values far from the mean) or downsampling using > your favorite method. Doing this quickly in IDL means doing it > w/o loops, so while conceptually the problem is not difficult, it > does seem somewhat more difficult to do it properly in IDL. > > Anyone out there thought about this problem before? > > -Jonathan > > Vince wrote: >> >> print, round(rebin(float([5,5,5,5,4]),1)) >> >> Hassle? >> >> Maybe you could write a function. Which leads me to a new question: >> >> Is it possible to define a function or procedure in IDL that can take >> an arbitrary number of arguments, e.g.: >> >> funct…
creator: hradilv.nospam
date: 2002-03-22T18:53:11-00:00

Re: rebin question
type: item
description: You could certainly write a function that takes an arbitrary number of arguments up to a limit, then use n_params to see how many you actually got. It looks like IDL only allows up to 8-dimensional arrays (which is a goodly number). I only wrote the 2-d case, but the n-d case should be possible. -Jonathan Craig Markwardt wrote: > > hradilv.nospam@yahoo.com (Vince) writes: > >> print, round(rebin(float([5,5,5,5,4]),1)) >> >> Hassle? >> >> Maybe you could write a function. Which leads me to a new question: >> >> Is it possible to define a function or procedure in IDL that can take >> an arbitrary number of arguments, e.g.: >> >> function my_rebin, a, arg1, arg2, ... >> >> return, round( rebin( float(a), arg1, arg2, ... ) ) >> end > > Answer: no, but I've wanted one for a long time. > > Craig > > -- > ------------------------------------------------------------ -------------- > Craig B. Markwardt, Ph.D. EMAIL: craigmnet@cow.physics.wisc.edu > Astrophysics, IDL, Finance, Derivatives | Remove "net" for better response > ------------------------------------------------------------ --------------
creator: Jonathan Joseph
date: 2002-03-22T18:53:30-00:00

Re: rebin question
type: item
description: Jonathan Joseph (jj21@cornell.edu) writes: > You could certainly write a function that takes an arbitrary number > of arguments up to a limit, then use n_params to see how many you > actually got. It looks like IDL only allows up to 8-dimensional > arrays (which is a goodly number). I only wrote the 2-d case, > but the n-d case should be possible. I'm not sure "arbitrary" is the right word here. One can write procedures and functions with a "variable" number of arguments, up to some arbitrary (to RSI) number of 100 or 200 or whatever it is. But each variable *must* be defined on the procedure or function definition line. In the case of the function under discussion, you could define 8 arguments (the first would probably have to be a required argument, and the rest could be optional). But you will need some kind of CASE statement to call REBIN correctly: CASE N_PARAMS() OF 0: Message, 'Whoops> Wrong!" 1: A = REBIN(arg1) 2: A = REBIN(arg1, arg2) ... ENDCASE Cheers, David -- David W. Fanning, Ph.D. Fanning Software Consulting Phone: 970-221-0438, E-mail: david@dfanning.com Coyote's Guide to IDL Programming: http://www.dfanning.com/ Toll-Free IDL Book Orders: 1-888-461-0155
creator: David Fanning
date: 2002-03-22T19:14:32-00:00

Re: rebin question
type: item
description: Thanks, that's seems more reasonable than what I was thinking. It still uses a loop, but only over the number of elements in the box. I think I can definitely adapt this strategy to my needs. -Jonathan Vince wrote: > > Sorry. I see the hassle now. > > I just did a quick search for 'rebin' at > http://www.astro.washington.edu/deutsch/idl/htmlhelp/index.h tml and > maybe you should take a look at 'boxave'? > > On Fri, 22 Mar 2002 13:40:32 -0500, Jonathan Joseph <jj21@cornell.edu> > wrote: > >> >> It looks nice doesn't it, and I did write a procedure for the simple >> case of averaging, but it's not as clean cut as you indicate: >> >> 1. first one needs to get the type of the incoming image - you don't >> want to round the result of a floating point type image - that >> would give you the wrong result. >> >> 2. conversion should be done to double precision floating point >> (not float) otherwise large long integers will lose precision. >> loss of precision for large L64 integers will occur even with >> conversion to double, so they can't be handled properly at all. >> >> 3. need to convert back to the proper type, so your solution >> should be wrapped by a fix(..., type=type) >> >> 4. instead of a rebin, there is now a rebin, two type conversions >> and a round, which will slow things down and use more memory. >> >> So, it is a hassle. >> >> But yes, it's still not difficult to write a function to handle the >> SIMPLE case of averaging for CERTAIN data types. But that does not >> help with the problem of writing a more general function that handles >> downsampling using median or downsampling using a mean excluding >> outliers (pixels with values far from the mean) or downsampling using >> your favorite method. Doing this quickly in IDL means doing it >> w/o loops, so while conceptually the problem is not difficult, it >> does seem somewhat more difficult to do it properly in IDL. >> >> Anyone out there thought about this problem before? >> >> -Jonathan >> >> Vince wro…
creator: Jonathan Joseph
date: 2002-03-22T19:20:54-00:00

Re: rebin question
type: item
description: Jonathan Joseph wrote: > > It looks nice doesn't it, and I did write a procedure for the simple > case of averaging, but it's not as clean cut as you indicate: > > 1. first one needs to get the type of the incoming image - you don't > want to round the result of a floating point type image - that > would give you the wrong result. > > 2. conversion should be done to double precision floating point > (not float) otherwise large long integers will lose precision. > loss of precision for large L64 integers will occur even with > conversion to double, so they can't be handled properly at all. Hi JJ, Since you couldn't walk down the hall to bug me... ;) This argument is a bit off. When you work in integer precision, all operations occur as integer arithmetic. Thus, your original rebin example of (5+5+5+5+4)/5=24/5=4 is an exactly correct integer calculation. REBIN doesn't "averages the pixels, but then instead of rounding to the nearest integer, simply take the integer part of the average", it performs arithmetic at the precision of its inputs. Integer arithmetic truncates, not rounds (try print,4/5). You seem to want REBIN to switch back and forth between numeric types (in the way you could do with float() and int()). A better illustration is: IDL> print,rebin([[4LL],replicate(5LL,4)],1) 4 IDL> print,total(replicate(10000000000000000000ULL,1)) 1.0000000e+19 IDL> print,total(replicate(10000000000000000000ULL,2)) 1.5532559e+18 IDL> print,rebin(replicate(10000000000000000000ULL,2),1),format=' (G)' 7.766279631452242E+17 Uhh ohh, overflow, but: IDL> print,rebin(double(replicate(10000000000000000000ULL,2)),1), format='(G)' 1.000000000000000E+19 OK, that worked, now how about: IDL> print,rebin(double(replicate(10000000000000000002ULL,2)),1), format='(E30.22)' 1.0000000000000000000000E+19 Hmm, we lost that 2: insufficient precision rearing it's ugly head. All of these are also using correct (Long-64) integer arithmethic. The fact that you can't average together large 64-bit num…
creator: JD Smith
date: 2002-03-22T19:49:11-00:00

Re: rebin question
type: item
description: hradilv.nospam@yahoo.com (Vince) writes: > Maybe you could write a function. Which leads me to a new question: > > Is it possible to define a function or procedure in IDL that can take > an arbitrary number of arguments, e.g.: > > function my_rebin, a, arg1, arg2, ... > > return, round( rebin( float(a), arg1, arg2, ... ) ) > end Sure. Something like this: function my_rebin, a, $ arg0, arg1, arg2, arg3, arg4, arg5, arg6, arg7, arg8, arg9 ;continue to heart's content narg = n_params()-1 command = 'result = round( rebin( float(a)' for i = 0, narg-1 do begin command = command + string(', arg',i,format='(a,i0)') endfor command = command + ') )' junk = execute(command) return, result end I imagine there are limits placed on this technique by the maximum number of arguments to an IDL procedure, or the maximum length of a string EXECUTE can handle. Mark Fardal University of Victoria
creator: Mark Fardal
date: 2002-03-25T06:50:21-00:00

Re: rebin question
type: item
description: "Mark Fardal" <fardal@coral.phys.uvic.ca> wrote in message news:yj1zo0xta36.fsf@coral.phys.uvic.ca... > hradilv.nospam@yahoo.com (Vince) writes: >> Is it possible to define a function or procedure in IDL that can take >> an arbitrary number of arguments... > > Sure. Something like this: > > function my_rebin, a, $ > arg0, arg1, arg2, arg3, arg4, arg5, arg6, arg7, arg8, arg9 > ;continue to heart's content > > narg = n_params()-1 > command = 'result = round( rebin( float(a)' > for i = 0, narg-1 do begin > command = command + string(', arg',i,format='(a,i0)') > endfor > command = command + ') )' > junk = execute(command) > return, result > end > > I imagine there are limits placed on this technique by the maximum > number of arguments to an IDL procedure, or the maximum length of a > string EXECUTE can handle. The maximum number of arguments to an IDL procedure is far higher than any sane programmer would want to use. The maximum length of an EXECUTE'd string used to be a significant limitation in earlier versions of IDL (I think it was 64, later 256) but in 5.4 or 5.5 it was also increased to an effectively infinite value. When writing wrapper procedures of this sort (which I do quite often, for various reasons) I prefer to use this form pro myfoo, p1, p2, ... case n_params() of 0: foo 1: foo, p1 2: foo, p1, p2 ... endcase end I have gone as far as handling 15 positional parameters, but I don't think I've ever used more than 4. -- Mark Hadfield m.hadfield@niwa.co.nz Ka puwaha et tai nei http://katipo.niwa.co.nz/~hadfield Hoea tatou National Institute for Water and Atmospheric Research (NIWA)
creator: Mark Hadfield
date: 2002-03-25T22:07:38-00:00

Re: rebin question
type: item
description: Hi JD, Now that you are no longer conveniently located, I wonder which takes more of your time: The old going down to your office and getting an explanation from you directly, or posting to this group and you constructing a detailed response :) I guess this way everyone gets the benefit of your words of wisdom. -Jonathan JD Smith wrote: > > Jonathan Joseph wrote: >> >> It looks nice doesn't it, and I did write a procedure for the simple >> case of averaging, but it's not as clean cut as you indicate: >> >> 1. first one needs to get the type of the incoming image - you don't >> want to round the result of a floating point type image - that >> would give you the wrong result. >> >> 2. conversion should be done to double precision floating point >> (not float) otherwise large long integers will lose precision. >> loss of precision for large L64 integers will occur even with >> conversion to double, so they can't be handled properly at all. > > Hi JJ, > > Since you couldn't walk down the hall to bug me... ;) > > This argument is a bit off. When you work in integer precision, all > operations occur as integer arithmetic. Thus, your original rebin > example of (5+5+5+5+4)/5=24/5=4 is an exactly correct integer > calculation. REBIN doesn't "averages the pixels, but then instead of > rounding to the nearest integer, simply take the integer part of > the average", it performs arithmetic at the precision of its inputs. > Integer arithmetic truncates, not rounds (try print,4/5). You seem to > want REBIN to switch back and forth between numeric types (in the way > you could do with float() and int()). > > A better illustration is: > > IDL> print,rebin([[4LL],replicate(5LL,4)],1) > 4 > IDL> print,total(replicate(10000000000000000000ULL,1)) > 1.0000000e+19 > IDL> print,total(replicate(10000000000000000000ULL,2)) > 1.5532559e+18 > IDL> print,rebin(replicate(10000000000000000000ULL,2),1),format=' (G)' > 7.766279631452242E+17 > > Uhh ohh, overflow, but: > > IDL> print,rebin(double(r…
creator: Jonathan Joseph
date: 2002-03-25T22:24:27-00:00